Graphical Representation and Modeling of Metagenomic Reads


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Documentation for package ‘GrammR’ version 1.0.0

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GrammR-package Graphical Representation and Modeling of Metagenomic Reads
Count2Distance Calculating the dissimilarity matrix for metagenomic count data
GrammR Graphical Representation and Modeling of Metagenomic Reads
GrammRGUI GrammR GUI for graphical modeling and visualization
GrammRServ Graphical Representation without a GUI
GraphMetagen Graphical model construction for metagenomic data
KenDist Wrapper for the C program which calculates the Kendall's tau-distance.
Make2DPlots Construct plots for multidimensional scaling models.
Make3DPlots Construct plots for multidimensional scaling models.
Make4DPlots Construct plots for multidimensional scaling models.
MakePlots2D Construct plots for multidimensional scaling models.
MakePlots3D Construct plots for multidimensional scaling models.
MakePlots4D Construct plots for multidimensional scaling models.
MatrixkNorm Calculate l_p-norm distance between samples
MCError Misclassification Error
metagencounts Randomly generated Metagenomic Counts
OptimClusts Optimal Cluster Calculator
Summarize Display summary of the graphical model constructed.